species:   Rhsol
pid:       PID0633
parent:    Rhi-milR-40
paralog:   
locus:     KB317791.1:30574-30650
matures:   ['CACAAUCCCUAUGUAGAAGUCA', 'GCUUGACAUGGGGUGUAUUG']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317791.1:30574-30650

0 out of bounds
6 alignments
5 proper strand
2 stranded perfect matches

            **********************        ************************           
UGCUUGAAAGCCCGCUUGACAUGGGGUGUAUUGGAAGAAUCUCCGCACAAUCCCUAUGUAGAAGUCACAAUCAAGUU
.((((((......((((.(((((((((((..((((......)))).)))..))))))))..)))).....)))))).
---------------------------------------------CACAAUCCCUAUGUAGAAGUCA---------- l=22 a=0 c
-------------GCUUGACAUGGGGUGUAUUG-------------------------------------------- l=20 a=0 c*
--------------------------------------------GCACAAUCCCUAUGUAGAAGUC----------- l=22 a=1 ma
--------------CUUGACAUGGGGUGUAUUGG------------------------------------------- l=20 a=0 ma*

--------------------------UGUAUUGGAAGAAUCUCuGCA------------------------------ l=21 a=1 
-------------------------------------------uGCACAAUCCCUAUGUAGA--------------- l=19 a=1 
-------------------------------------------uGCACAAUCCCUAUGUAGAAGUC----------- l=23 a=1 
--------------------------------------------GCACAAUCCCUAUGUAGAAGUC----------- l=22 a=1 (ma)
---------------------------------------------CACAAUCCCUAUGUAGAAGUCAC--------- l=23 a=1 

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-011
